Klebsiella pneumoniae complex Guadeloupe in Guadeloupe: limited trans... - SRA

SRX13812642: Klebsiella pneumoniae complex Guadeloupe in Guadeloupe: limited transmission between humans, animals and the environment
1 ILLUMINA (NextSeq 500) run: 2.3M spots, 693.5M bases, 295.1Mb downloads

Design: DNA was extracted with a DNA Mini Kit (Qiagen). The libraries were prepared with a Nextera XT Kit (Illumina), and sequencing was performed with the NextSeq 500 system (Illumina), generating a mean of 150 base-pair end reads.

Submitted by: Institut Pasteur in Guadeloupe

Study: Klebsiella pneumoniae Raw sequence reads

PRJNA778230 • SRP355416 • All experiments • All runs

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The primary objective was to determine the genomic features of Klebsiella pneumoniae complex isolates using WGS collected using non-selective isolation methods from non-human sources and compared with those obtained from contemporaneous clinical isolate samples in order to identify source attribution and transmission patterns of this pathogen

Sample: Nosocomial

SAMN25041705 • SRS11693249 • All experiments • All runs

Organism: Klebsiella variicola subsp. variicola

Library:

Name: KP231

Instrument: NextSeq 500

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 2.3M spots, 693.5M bases, 295.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR17644216	2,313,991	693.5M	295.1Mb	2022-07-01

ID:: 19233139

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